Practical approaches to causal relationship exploration (http://nugget.unisa.edu.au/Causalbook/).

ParallelPC: Paralellised Versions of Constraint Based Causal Discovery Algorithms (https://cran.r-project.org/web/packages/ParallelPC/index.html)

miRLAB: Dry lab for exploring miRNA-mRNA relationships (https://www.bioconductor.org/packages/3.3/bioc/html/miRLAB.html)

BNSA: A Bayesian Network based Tool for Inferring Gene Regulatory Relationships

Data Mining Community’s Top Resources: http://www.kdnuggets.com/